############################################ Molecular Modeling Software for Biology 5357 ############################################ If you have any trouble downloading any of the programs or files in this directory, or trouble getting things to run on your local computer, send an email with details of the issue to ponder@dasher.wustl.edu ################################# Contents of the Chimera Directory ################################# chimera-1.15-mac64.dmg Chimera for macOS as disk image file chimera-1.15-win64.exe Chimera for Windows as self-installer chimera-1.15-linux64.bin Chimera for Linux as binary installer installation.pdf Installation instructions for Chimera introduction.pdf Basic Introductory info for Chimera getting-started.pdf Getting Started info for Chimera quick-reference.pdf Quick Reference guide for Chimera users-guide.pdf Full Users Guide for Chimera pdb-file-prep.pdf PDB File Prep for use with Chimera ################################## Contents of the ChimeraX Directory ################################## chimerax-1.1-macos.dmg ChimeraX for macOS as disk image file chimerax-1.1-windows.exe ChimeraX for Windows as self-installer chimerax-1.1-linux.tar.gz ChimeraX for generic Linux systems chimerax-1.1-ubuntu20.04.deb ChimeraX for Ubuntu 20.04 as install package chimerax-1.1-redhat8.rpm ChimeraX for RedHat 8 as install package features.pdf Features List for ChimeraX overview.pdf Overview Document for ChimeraX publication.pdf Published Article for ChimeraX tutorial.pdf Intro Tutorial for ChimeraX ############################## Contents of the KiNG Directory ############################## king-2.23-macos.dmg KiNG executable for macOS as a disk image file king-2.23-windows.zip KiNG executable for Windows as zipped file king-2.23-linux.tgz KiNG executable for Linux as a gzipped tar file king-user-guide.pdf User's Guide for the KiNG KineMage Viewer king-install-guide.pdf Installation Info for the KiNG KineMage Viewer kinemage-b+t KineMage tutorial files for use with KiNG; keyed to cover the Branden and Tooze book kinemage-teach | these three directories contain KineMage tutorials kinemage-tour | gathered from various sources that cover different kinemage-demo | aspects of protein structure; try them out! ############################### Contents of the PyMOL Directory ############################### pymol-1.7.4.5-macos.dmg MacPyMOL for macOS as disk image file pymol-1.7.4.5-win64.msi PyMOL for 64-bit Windows as installer pymol-1.7.4.5-win32.msi PyMOL for 32-bit Windows as installer pymol-1.7.4.5-linux.tar.gz PyMOL for Linux as a gzipped tar file beginners.pdf Beginner's Info for PyMOL introduction.pdf Introduction to PyMOL user-guide.pdf User's Guide for PyMOL simple-tutorial.pdf Easy PyMOL Tutorial by Dafydd Jones tutorial.pdf Tutorial for basic use of PyMOL quick-reference.pdf Quick Reference Guide for PyMOL reference.pdf Full Reference Guide for PyMOL ############################# Contents of the VMD Directory ############################# vmd-1.9.4a51-macos10.13.dmg VMD for macOS 10.13 & before as disk image vmd-1.9.4a48-macos10.15.dmg VMD for macOS 10.14 & later as disk image vmd-1.9.4a51-macos11.dmg VMD for macOS 11 as disk image file vmd-1.9.4a51-macos-m1.dmg VMD for macOS & m1 CPU as disk image vmd-1.9.4a51-windows.msi VMD for Windows as a self-installer vdw-1.9.4a51-linux.tar.gz VMD for Linux as a gzipped tar file users-guide.pdf Full User's Guide for the VMD program install.pdf Installation Guide for the VMD program tutorial.pdf Interactive Tutorial for basic use of VMD tutorial-files.tar.gz | files used by the VMD tutorial; you only tutorial-files.zip | need one of these identical sets of files