c c c ################################################### c ## COPYRIGHT (C) 2010 by Jay William Ponder ## c ## All Rights Reserved ## c ################################################### c c ################################################################## c ## ## c ## hpmf.i -- hydrophobic potential of mean force parameters ## c ## ## c ################################################################## c c c rcarbon radius of a carbon atom for use with HPMF c rwater radius of a water molecule for use with HPMF c acsurf surface area of a hydrophobic carbon atom c safact constant for calculation of atomic surface area c tslope tanh slope (set very steep, default=100) c toffset shift the tanh plot along the x-axis (default=6) c hpmfcut cutoff distance for pairwise HPMF interactions c h1,h2,h3 hydrophobic PMF well depth parameter c c1,c2,c3 hydrophobic PMF well center point c w1,w2,w3 reciprocal of the hydrophobic PMF well width c c rpmf radius of each atom for use with hydrophobic PMF c acsa SASA value for each hydrophobic PMF carbon atom c npmf number of hydrophobic carbon atoms in the system c ipmf number of the atom for each HPMF carbon atom site c c real*8 rcarbon,rwater real*8 acsurf,safact real*8 tslope,toffset real*8 hpmfcut real*8 h1,h2,h3 real*8 c1,c2,c3 real*8 w1,w2,w3 parameter (rcarbon=1.7d0) parameter (rwater=1.4d0) parameter (acsurf=120.7628d0) parameter (safact=0.3516d0) parameter (tslope=100.0d0) parameter (toffset=6.0d0) parameter (hpmfcut=11.0d0) parameter (h1=-0.7308004860404441194d0) parameter (h2=0.2001645051578760659d0) parameter (h3=-0.0905499953418473502d0) parameter (c1=3.8167879266271396155d0) parameter (c2=5.4669162286016419472d0) parameter (c3=7.1167694861385353278d0) parameter (w1=1.6858993102248638341d0) parameter (w2=1.3906405621629980285d0) parameter (w3=1.5741657341338335385d0) integer npmf,ipmf real*8 rpmf,acsa common /hpmf/ rpmf(maxatm),acsa(maxatm),npmf,ipmf(maxatm)