ffe.parsers
Class SystemFilter

java.lang.Object
  ffe.parsers.SystemFilter

All Implemented Interfaces:

java.lang.Runnable

Direct Known Subclasses:

INTFilter, NEDFilter, PDBFilter, SocketFilter, XYZFilter

public abstract class SystemFilter

extends java.lang.Object

implements java.lang.Runnable

The SystemFilter class is the base class for most file parsers.

Field Summary

static byte	ARC
protected java.util.ArrayList	atomList The atoms and bonds ArrayLists are filled by the filters that extend this base class.
protected java.util.ArrayList	bondList
protected boolean	file_read
protected byte	filetype
protected MainPanel	fpanel
protected FSystem	fsystem
static byte	INT
protected MMFilter	mmfilter
static byte	NED
static byte	PDB
static byte	SIM
protected javax.swing.JLabel	statusBar
static byte	XYZ

Constructor Summary

SystemFilter()

SystemFilter(FSystem f, MainPanel m)

SystemFilter(FSystem f, MMFilter mm, MainPanel m)

Method Summary

boolean	FileRead() Returns true if the read was successful
FSystem	getFSystem() Return the FSystem that has been read in
byte	getType()
abstract boolean	readfile() This method is different for each subclass and must be overidden
void	run()
void	setFileRead(boolean b)
void	setFSystem(FSystem f)
void	setType(byte t)
static java.lang.String	toFileString(byte filetype)
static java.io.File	version(java.io.File file)
abstract boolean	writefile()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

fsystem

protected FSystem fsystem

atomList

protected java.util.ArrayList atomList

The atoms and bonds ArrayLists are filled by the filters that extend this base class.

bondList

protected java.util.ArrayList bondList

mmfilter

protected MMFilter mmfilter

file_read

protected boolean file_read

filetype

protected byte filetype

fpanel

protected MainPanel fpanel

statusBar

protected javax.swing.JLabel statusBar

XYZ

public static final byte XYZ

See Also:

Constant Field Values

INT

public static final byte INT

See Also:

Constant Field Values

ARC

public static final byte ARC

See Also:

Constant Field Values

PDB

public static final byte PDB

See Also:

Constant Field Values

SIM

public static final byte SIM

See Also:

Constant Field Values

NED

public static final byte NED

See Also:

Constant Field Values

Constructor Detail

SystemFilter

public SystemFilter()

SystemFilter

public SystemFilter(FSystem f,
                    MainPanel m)

SystemFilter

public SystemFilter(FSystem f,
                    MMFilter mm,
                    MainPanel m)

Method Detail

readfile

public abstract boolean readfile()

This method is different for each subclass and must be overidden

writefile

public abstract boolean writefile()

run

public void run()

Specified by:

run in interface java.lang.Runnable

getFSystem

public FSystem getFSystem()

Return the FSystem that has been read in

setFSystem

public void setFSystem(FSystem f)

FileRead

public boolean FileRead()

Returns true if the read was successful

setFileRead

public void setFileRead(boolean b)

setType

public void setType(byte t)

getType

public byte getType()

toFileString

public static java.lang.String toFileString(byte filetype)

version

public static java.io.File version(java.io.File file)