ffe.panels
Class MainPanel

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  ffe.panels.MainPanel

All Implemented Interfaces:

javax.accessibility.Accessible, java.awt.event.ActionListener, javax.swing.event.ChangeListener, java.util.EventListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable

public final class MainPanel

extends javax.swing.JPanel

implements java.awt.event.ActionListener, javax.swing.event.ChangeListener

The MainPanel class is the main container for holding Force Field Explorer components.

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

static ARCFileFilter	arcFileFilter
static DYNFileFilter	dynFileFilter
FullScreenWindow	fullScreenWindow
Graphics3D	graphics Java3D Canvas
static int	GRAPHICS
static java.awt.GraphicsDevice	graphicsDevice Currently used for testing full screen graphics
static InducedFileFilter	indFileFilter
static INTFileFilter	intFileFilter
static KeyFileFilter	keyfilefilter KeyFileFilter for reuse
KeywordPanel	keyPanel Reference to the Keyword Editor
static int	KEYWORDS
static int	LOGS
static int	MODELING
static PDBFileFilter	pdbFileFilter
static PRMFileFilter	prmFileFilter
static XYZFileFilter	xyzFileFilter XYZFileFilter for reuse

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Container

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

MainPanel(javax.swing.JFrame f)
MainPanel Constructor

Method Summary

void	actionPerformed(java.awt.event.ActionEvent evt) Handle most File, Edit, View and Help Menu Commands This should probably be partioned between a few different handlers
void	closeActive() Detach the active FSystem's BranchGroup from the Scene and clear that FSystem's data
void	closeAll() Close all open systems
void	connectToTINKER(FSystem m, java.lang.Thread t)
boolean	createKeyFile(FSystem system)
bsh.Interpreter	getBeanShell()
static javax.swing.JColorChooser	getColorChooser()
static java.io.File	getCWD()
static javax.swing.JFileChooser	getFileChooser()
Graphics3D	getGraphics3D()
JobPanel	getJobPanel()
KeywordPanel	getKeywordPanel()
LogPanel	getLogPanel()
FMenuBar	getMenu() Get the Menu Bar
Root	getRoot() Returns the molecular root node
javax.swing.JLabel	getStatusBar()
Trajectory	getTrajectory() Get the Trajectory wrapper for the active system
Tree	getTree()
void	initialize()
void	loadPrefs() Load preferences from the user node
void	merge() Merge two or more selected FSystem Nodes into one FSystem node.
void	open() Trys to open a file picked from a JFileChooser A successful read is followed by attachment of the FSystem to the root node and the update of the various displays
void	open(java.io.File f) Opens the supplied File
void	open(java.lang.String name)
void	openFromPDB() Opens the supplied File
void	openInduced()
boolean	openKey(FSystem newSystem, boolean createKey) Attempt to open a TINKER *.key file
void	openOn(java.io.File f, FSystem oldSystem)
void	openRestart()
void	release() Close the connection to a running simulation
void	resizePanes(int move) Set the split panes to their default proportions
void	save(java.io.File file) Save the currently selected System to disk
void	savePrefs() Save preferences to the user node
void	setCWD(java.io.File f)
void	setPanel(int panel)
void	stateChanged(javax.swing.event.ChangeEvent evt)
void	update(boolean updateRender) Refresh various Panels based on the active System

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addPropertyChangeListener, addPropertyChangeListener, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getGraphics, getHeight, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPreferredSize, getPropertyChangeListeners, getPropertyChangeListeners, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isPreferredSizeSet, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removePropertyChangeListener, removePropertyChangeListener, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFont, setForeground, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

GRAPHICS

public static final int GRAPHICS

See Also:

Constant Field Values

KEYWORDS

public static final int KEYWORDS

See Also:

Constant Field Values

MODELING

public static final int MODELING

See Also:

Constant Field Values

LOGS

public static final int LOGS

See Also:

Constant Field Values

graphicsDevice

public static java.awt.GraphicsDevice graphicsDevice

Currently used for testing full screen graphics

keyfilefilter

public static KeyFileFilter keyfilefilter

KeyFileFilter for reuse

keyPanel

public KeywordPanel keyPanel

Reference to the Keyword Editor

xyzFileFilter

public static XYZFileFilter xyzFileFilter

XYZFileFilter for reuse

arcFileFilter

public static ARCFileFilter arcFileFilter

intFileFilter

public static INTFileFilter intFileFilter

dynFileFilter

public static DYNFileFilter dynFileFilter

indFileFilter

public static InducedFileFilter indFileFilter

prmFileFilter

public static PRMFileFilter prmFileFilter

pdbFileFilter

public static PDBFileFilter pdbFileFilter

graphics

public Graphics3D graphics

Java3D Canvas

fullScreenWindow

public FullScreenWindow fullScreenWindow

Constructor Detail

MainPanel

public MainPanel(javax.swing.JFrame f)

MainPanel Constructor

Parameters:

f - Application Frame

Method Detail

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent evt)

Handle most File, Edit, View and Help Menu Commands This should probably be partioned between a few different handlers

Specified by:

actionPerformed in interface java.awt.event.ActionListener

stateChanged

public void stateChanged(javax.swing.event.ChangeEvent evt)

Specified by:

stateChanged in interface javax.swing.event.ChangeListener

closeActive

public void closeActive()

Detach the active FSystem's BranchGroup from the Scene and clear that FSystem's data

closeAll

public void closeAll()

Close all open systems

openRestart

public void openRestart()

connectToTINKER

public void connectToTINKER(FSystem m,
                            java.lang.Thread t)

getMenu

public FMenuBar getMenu()

Get the Menu Bar

Returns:

menu

getTree

public Tree getTree()

getRoot

public Root getRoot()

Returns the molecular root node

getStatusBar

public javax.swing.JLabel getStatusBar()

getBeanShell

public bsh.Interpreter getBeanShell()

getGraphics3D

public Graphics3D getGraphics3D()

getKeywordPanel

public KeywordPanel getKeywordPanel()

getJobPanel

public JobPanel getJobPanel()

getLogPanel

public LogPanel getLogPanel()

getCWD

public static java.io.File getCWD()

setCWD

public void setCWD(java.io.File f)

getTrajectory

public Trajectory getTrajectory()

Get the Trajectory wrapper for the active system

Returns:

trajectory

openInduced

public void openInduced()

initialize

public void initialize()

openKey

public boolean openKey(FSystem newSystem,
                       boolean createKey)

Attempt to open a TINKER *.key file

Returns:

Key file that was found, or null if nothing could be found

createKeyFile

public boolean createKeyFile(FSystem system)

loadPrefs

public void loadPrefs()

Load preferences from the user node

merge

public void merge()

Merge two or more selected FSystem Nodes into one FSystem node. There are a few gotchas that need to be fixed

open

public void open()

Trys to open a file picked from a JFileChooser A successful read is followed by attachment of the FSystem to the root node and the update of the various displays

openOn

public void openOn(java.io.File f,
                   FSystem oldSystem)

open

public void open(java.io.File f)

Opens the supplied File

Parameters:

f - File to open

open

public void open(java.lang.String name)

openFromPDB

public void openFromPDB()

Opens the supplied File

release

public void release()

Close the connection to a running simulation

resizePanes

public void resizePanes(int move)

Set the split panes to their default proportions

save

public void save(java.io.File file)

Save the currently selected System to disk

Parameters:

file - File to save the system to

savePrefs

public void savePrefs()

Save preferences to the user node

setPanel

public void setPanel(int panel)

update

public void update(boolean updateRender)

Refresh various Panels based on the active System

Parameters:

updateRender - If true, the default rendering is attempted

getColorChooser

public static javax.swing.JColorChooser getColorChooser()

getFileChooser

public static javax.swing.JFileChooser getFileChooser()