######################################################### Web/ftp Site for Biology 5325 Molecular Modeling Software ######################################################### If you have any trouble downloading any of the programs or files in this directory, or trouble getting things to run on your local computer, send an email with details to ponder@dasher.wustl.edu ########################################### Contents of the KineMage Software Directory ########################################### kinemage-windows KineMage executable for Windows computers kinemage-macosx KineMage executable for Macintosh OS X computers; open the "disk image", and read the instructions in the "license_instructions" folder kinemage-linux KineMage executable for Linux computers; linked static, should run on most variants of Linux kinemage-b+t tutorial files for use with KineMage; these files cover the chapters of the Branden and Tooze book kinemage-teach | these three directories contain KineMage tutorials kinemage-tour | gathered from various sources that cover different kinemage-demo | aspects of protein structure; try them out! ######################################### Contents of the RasMol Software Directory ######################################### rasmol-windows RasMol executable and online help for Windows computers rasmol-mac RasMol for Macintosh as a binhex'd self-extracting archive (download, and double click to unpack); this is an OS 9 application, and will only run in "Classic" mode on OS X machines rasmol-linux RasMol executable and online help file for Linux computers; should run on most Linux variants rasmol-pdb various Protein Data Bank (PDB) files containing protein structures discussed in class; these can be viewed with the RasMol software; PDB files are available from http://www.rcsb.org/pdb/ ######################################## Contents of the PyMOL Software Directory ######################################## pymol-windows.zip PyMOL executable installation package for Windows computers pymol-mac.tar.gz MacPyMOL for Macintosh OSX as a gzipped tar archive; download the file, ungzip it and untar it to create the MacPyMOL application; this is a Universal app and should run on all Macs with OSX Tiger or better pymol-linux.tar.gz PyMOL executable for Linux computers as a gzipped tar archive; should run on most Linux variants